Coconut, Pecan & Chocolate Chip Cookies

July 31, 2025
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Some folks love their desserts unapologetically sweet, like a nostalgic throwback to childhood birthday parties—while others lean toward more refined flavors, where a touch of sweetness is balanced by nuance and depth. I identify with the second camp, so I’ve created these Coconut, Pecan & Chocolate Chip Cookies. 

The subtle bitterness of the cacao nibs and the flaky salt create a complexity and balance that makes this cookie feel somehow even more decadent. 

And while this is still a sweet treat, it’s got a lot of ingredients you can feel good about. It’s gluten free, grain free, refined sugar free, and still satisfies your sweet tooth when you need a fix.

Ingredient Substitutions

  • No pecans? Walnuts or hazelnuts would be great substitutes.
  • No chocolate chips? Raisins are a good (and healthier) substitute.
  • No cacao nibs? You can just omit them. The cookies will be slightly sweeter.
Picture of recipe ingredients measured out.

Recipe Tips & FAQs

  • Can you sub the almond flour for almond meal? Not recommended. Almond meal is ground with the husk and it creates a grittier texture.
  • Coconut sugar won’t cream the butter as much as granulated sugar, but the butter should still get a little lighter and more aerated as you beat the two together. The salt will help this process a little, and that’s why it’s added at the beginning of the recipe. If you don’t have a stand or hand mixture, start with room temperature butter and make sure to mix it with the sugar and salt until the color gets a little lighter.
  • Adding the egg slowly is key to making a great cookie. This helps it incorporate completely without destroying the air you incorporated when mixing the butter and sugar.
  • You would be very surprised by how little you should mix in the dry ingredients. It’s ok to still see a little bit of flour in your dough. Your cookies will have an infinitely better texture once you master this skill.

Serving Suggestions

  • Dunk it in a glass of fresh, sweet cashew milk.
  • Bake it! Use the dough as a gluten free pie or tart crust. 
  • Crumble it on top of a bowl of chocolate or pistachio gelatto

Storage and Shelf Life

Make Ahead: You can make the dough up to 3 months in advance and bake the cookies when you’re ready.

Refrigerate: Individually scooped cookie dough will hold in the refrigerator for up to 3 days in an airtight container.

Freezer: Individually scooped cookie dough freezes well for up to 3 months in an airtight container.

Reheat Instructions

Warm in a toaster oven at 325˚F for 5 minutes if desired.

Final Thoughts

To be honest when I get a craving for sweets I tend to avoid a full blown dessert and just indulge in a little bit of dark chocolate or dried pineapple. 

But as a personal chef, I usually end up indulging in treats that I cook for my clients (if you’re not tasting, you’re not cooking… so I’ve heard). And when I get an order for these Coconut, Pecan & Chocolate Chip Cookies, I’ve got to have one. Splitting one open once they’ve cooled down for a few minutes, dunking it into some fresh cashew milk—that is just the kind of pick me up I need to power through the rest of a prep shift.

Have you tried this recipe? Make sure you let us know what you think in the comments below. And tag @heyeverydayalchemy on social media if you share a photo, I love to hear from you!

Coconut, Pecan and Chocolate Chip Cookies stacked with one being dunked in a glass of milk.

Coconut, Pecan & Chocolate Chip Cookies (Gluten Free)

Gluten-free cookies made with coconut, pecans, dark chocolate, and cacao nibs. Refined sugar-free and naturally sweetened for a balanced indulgence.
Active Time 20
Inactive Time 46
Yield 6 large cookies
Freezer Friendly? yes
Diet Gluten Free, Grain Free, Refined Sugar Free, Soy Free, Vegetarian

Special Equipment

  • 1 stand or hand mixer can do by hand with room temperature butter

Ingredients
  

  • 1.5 cups almond flour
  • 2 tablespoons coconut flour
  • 1 teaspoon baking powder
  • 4 ounces butter
  • 1 cup coconut sugar
  • ¼ teaspoon salt
  • 1 egg
  • 1 teaspoon vanilla extract
  • ½ cup chopped pecans
  • ½ cup shredded coconut
  • ½ cup dark chocolate chips
  • ¼ cup cacao nibs
  • Flaky salt such as kosher or Maldon

Instructions
 

  • Mix 1.5 cups of almond flour, 2 tablespoons of coconut flour and 1 teaspoon baking powder together in a mixing bowl.
  • Make the dough: Place 4 ounces of butter, 1 cup of coconut sugar and ¼ teaspoon of salt in a stand mixer with a paddle attachment and beat on medium speed until slightly aerated and creamy, about 2 minutes.
  • Whisk 1 egg in a separate bowl and slowly add the egg in, a little at a time, and scraping down the sides as needed, until it is fully incorporated.
  • Next turn the speed down to low and add the almond flour blend. Mix only briefly. The flour should be about a third of the way incorporated. Add the ½ cup each chopped pecans, shredded coconut, and dark chocolate chips as well as a ¼ cup cacao nibs. Fold the ingredients in with a spatula until just barely combined.
  • Scoop out onto a lined baking sheet and refrigerate for at least 30 minutes.
  • Bake: Preheat the oven to 350˚F. Flatten the cookies to about half an inch thick and sprinkle with a little bit of flaky salt.
  • Place the tray of cookies in the oven and bake for 8 minutes, then rotate the pans and bake for 8 minutes more. Remove the cookies from the oven and place them on a cooling rack. Enjoy fresh or store in an airtight container for 3-5 days.
Course: Dessert
Cuisine: American
Special Diet: Gluten Free, Grain Free, Refined Sugar Free, Soy Free, Vegetarian
Season: Fall, Spring, Summer, Winter
Recipe Type: Comfort food, Dessert, Holiday, Snacks
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